CV
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Education
- Ph.D in Ecology and Evolutionary Biology, University of Freiburg, 2022
- M.S. in Biology, University of Freiburg, 2017
- B.S. in Bioinformatics, Tongji University, 2014
Work experience
- Since Jan 2025 (current position)
- Gagneur lab, Technical University of Munich / German Human Genome-Phenome Archive (GHGA)
- developer of two open source bioinformatics pipelines:
- QC workflow↗ for genome sequencing centers across Germany
- nf-core/drop↗ for rare-disease RNA-seq analysis
- Provide data stewardship, consulting, and technical support to researchers via the research data hub
- 2022-2024: Bioinformatician
- Max Planck Institute for Biology of Ageing in Cologne, Bioinformatics Core Facility
- support the researchers by helping analyse all kind of different biological data and
- develop and maintain reproducible Next Generation Sequencing analysis pipelines and computational infrastructure
- https://bioinformatics.age.mpg.de/
Skills
- Bioinformatics
- analysing NGS data (DNA-seq, bulk and single cell RNA-seq, Ribo-seq, Nanopore, clip-seq)
- statistical analysis and visulization
- scripting (R, Python, bash)
- agile customer service
- workflow management with Nextflow, snakemaker, Docker and conda
- High-Performance & Cloud Computing
- Slurm, OpenStack, Terraform
- resource optimization
- Version Control & Collaboration
- git, GitHub
- agile
